PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495537.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 389aa    MW: 42961.7 Da    PI: 8.0327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-114167127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_004495537.1 41 PGEPDCSYYIRTGLCRFGATCRFNHPP 67
                    5789*********************97 PP

2zf-CCCH38.91.4e-1288112327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tGtCk+G++CkF+H++
  XP_004495537.1  88 QPECQFYLKTGTCKFGATCKFHHPR 112
                     799********************96 PP

3zf-CCCH39.78.3e-13134158327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C++++rtG+Ck+G++CkF+H++
  XP_004495537.1 134 EAECSYYLRTGECKFGNTCKFHHPQ 158
                     689********************97 PP

4zf-CCCH36.67.5e-12244269126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+f+++tG Ck+G+ C+F+H+
  XP_004495537.1 244 PGQPECQFYMKTGDCKFGAVCRFHHP 269
                     5789*********************8 PP

5zf-CCCH37.15.4e-12293317327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++lC f++r+G+Ck+G++CkF H++
  XP_004495537.1 293 EPLCVFYSRYGICKFGPSCKFDHPM 317
                     79*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874068IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-54468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-44666IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.26385113IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-685112IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-1088112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-591113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981131159IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6134160IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202243271IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6243270IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8245269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5248273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4249270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469290318IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6290317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5292317IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-9293317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4295315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEFHPTIPIS QPSFTPEGSL WMMKLRSTQT FMDSQFYPHR PGEPDCSYYI RTGLCRFGAT  60
CRFNHPPNAN LAIVTARMIG EFPERIGQPE CQFYLKTGTC KFGATCKFHH PRDQAGISGR  120
VALNILGYPL RPTEAECSYY LRTGECKFGN TCKFHHPQPS NNMTIPLKGS PIYLSTVHSP  180
TPQVRGFANW PRASYGPSSY TPLVMPQGVI SVPGWSAYSG QMGSVISTPP GSPLQRENIF  240
PDRPGQPECQ FYMKTGDCKF GAVCRFHHPH QRLIPVPPDC LLSSLGLPLR HGEPLCVFYS  300
RYGICKFGPS CKFDHPMGIF SYNLSASPLA DSTGRHLLGS SSATAALNLS SQGLVESSSA  360
KPRRLSISET RHIPSGDDDD DNDNIDEDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495537.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLI1NIJ30.0I1NIJ3_SOYBN; Uncharacterized protein
STRINGGLYMA20G36140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-151zinc finger protein 1